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Species belonging to selected taxon:
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
ABOUT THIS RECORD
ID:
MNEST000971
species:
Hordeum vulgare
miRNA family:
MIR2019
source:
miRNEST
Taxonomy by NCBI:
Hordeum vulgare
Hordeum
Triticeae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CGGGTCGGCGCTCCACGCGGC
miRNA*
GCTTGGGGCCAGACCCGGA
mismatches:
5
bulges:
1
View larger
pre-miRNA
ATCATCTGGAC
CGGGTCGGCGCTCCACGCGGC
CGTCAACTTCGGGCAGTACCCCTACTCGGGCTACCACCCCAACAAGCCCTTCGGTAAGCCCGAGGCCC
AATGCCGGTGCAGGGGAACGAGGAGTACGCGGG
GCTTGGGGCCAGACCCGGA
GAAGGGGC
dot-bracket secondary structure
.((.(((...(
((((((...((((((.((..(
(((..(((((.....((.((((..(((((((((((.................))).))))))))((((
......)).)).)))).))..)))))..)))).
)).))))))..))))))))
)).))...
SIMILARITIES
miRBase
no hits
PMRD
tae-miR2019
:
0.000002
microPC
no hits
UniProt
sp|P29250|LOX2_ORYSJ: 0.00000001
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record