ABOUT THIS RECORDspecies: Onchocerca volvulus
miRNA family: mir-1297
source: miRNEST
Taxonomy by NCBI:
Onchocerca volvulus Onchocerca Onchocercidae Filarioidea Spirurida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCAAGGAATTCAGGTATTGA miRNA* AGCGTCAGAAATTCACGGAACA mismatches: 5 bulges: 1 |
pre-miRNA
ATGGATATCAGTTCAAGGAATTCAGGTATTGATTCAACGGATCCAAATTGGAATCTTTTTTTGCATCAATTGCAAACTGAAAATCAGCGTCAGAAATTCA
CGGAACAGGTGCAAA
dot-bracket secondary structure
.....((((.((((..(((.(((.(((.((((((((..(((((((...))).))))...((((((.....)))))).)))..))))).))).))).))).
..)))).))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ATGGATATCAGTTCAAGGAATTCAGGTATTGATTCAACGGATCCAAATTGGAATCTTTTTTTGCATCAATTGCAAACTGAAAATCAGCGTCAGAAATTCA
CGGAACAGGTGCAAA
dot-bracket secondary structure
.....((((.((((..(((.(((.(((.((((((((..(((((((...))).))))...((((((.....)))))).)))..))))).))).))).))).
..)))).))))....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q9N408|TIM8_CAEEL: 0.0005 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
