miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Caenorhabditis elegans, Ancylostoma caninum, Ascaris suum, Heterorhabditis bacteriophora, Pristionchus pacificus, Caenorhabditis japonica, Caenorhabditis brenneri, Strongyloides ratti, Brugia malayi, Meloidogyne hapla, Heterodera glycines, Meloidogyne incognita, Caenorhabditis remanei, Onchocerca volvulus, Nippostrongylus brasiliensis, Meloidogyne chitwoodi, Globodera rostochiensis, Strongyloides stercoralis, Ancylostoma ceylanicum



ABOUT THIS RECORD

ID: MNEST009750
species: Onchocerca volvulus
miRNA family: mir-1297
source: miRNEST

Taxonomy by NCBI:
Onchocerca volvulus Onchocerca Onchocercidae Filarioidea Spirurida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTCAAGGAATTCAGGTATTGA

miRNA*
AGCGTCAGAAATTCACGGAACA

mismatches: 5
bulges: 1

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pre-miRNA
ATGGATATCAGTTCAAGGAATTCAGGTATTGATTCAACGGATCCAAATTGGAATCTTTTTTTGCATCAATTGCAAACTGAAAATCAGCGTCAGAAATTCA
CGGAACA
GGTGCAAA


dot-bracket secondary structure
.....((((.((((..(((.(((.(((.((((((((..(((((((...))).))))...((((((.....)))))).)))..))))).))).))).))).
..)))).
))))....



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|Q9N408|TIM8_CAEEL: 0.0005

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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