ABOUT THIS RECORDspecies: Frankliniella occidentalis
miRNA family: miR-1897
source: miRNEST
Taxonomy by NCBI:
Frankliniella occidentalis Frankliniella Thripinae Thripidae Thripoidea Terebrantia Thysanoptera Paraneoptera Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTTGGAGGGAGAAAGTGGGA miRNA* CCTTTTTCTTCTTACAATATT mismatches: 4 bulges: 0 |
pre-miRNA
ACATATCTCATTCCTTTTTCTTCTTACAATATTCCTTTCGCTTTGGAGGGAGAAAGTGGGATGAACTAGT
dot-bracket secondary structure
.......(((((((.((((((((((.(((.............))).)))))))))).)))))))......
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACATATCTCATTCCTTTTTCTTCTTACAATATTCCTTTCGCTTTGGAGGGAGAAAGTGGGATGAACTAGT
dot-bracket secondary structure
.......(((((((.((((((((((.(((.............))).)))))))))).)))))))......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
