miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Caenorhabditis elegans, Ancylostoma caninum, Ascaris suum, Heterorhabditis bacteriophora, Pristionchus pacificus, Caenorhabditis japonica, Caenorhabditis brenneri, Strongyloides ratti, Brugia malayi, Meloidogyne hapla, Heterodera glycines, Meloidogyne incognita, Caenorhabditis remanei, Onchocerca volvulus, Nippostrongylus brasiliensis, Meloidogyne chitwoodi, Globodera rostochiensis, Strongyloides stercoralis, Ancylostoma ceylanicum

ABOUT THIS RECORD

ID: MNEST009821
species: Globodera rostochiensis
miRNA family: mir-1322
source: miRNEST

Taxonomy by NCBI:
Globodera rostochiensis Globodera Heteroderinae Heteroderidae Tylenchoidea Tylenchina Tylenchida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
GGTGATGTTGCTGATGCTGGT

miRNA*
CTTGGCGTTATGACATTGCTGA

mismatches: 1
bulges: 1

View larger

pre-miRNA
TTCGACTTGGCGTTATGACATTGCTGAGTTTGTCGGTGATGTTGCTGATGCTGGTGG

dot-bracket secondary structure
.(((...((((((((((((((((((((.....)))))))))))).)))))))).)))

SIMILARITIES

miRBase no hits

PMRD no hits

microPC no hits

UniProt no hits

RFAM no hits

most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record