ABOUT THIS RECORDspecies: Globodera rostochiensis
miRNA family: mir-1322
source: miRNEST
Taxonomy by NCBI:
Globodera rostochiensis Globodera Heteroderinae Heteroderidae Tylenchoidea Tylenchina Tylenchida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGTGATGTTGCTGATGCTGGT miRNA* CTTGGCGTTATGACATTGCTGA mismatches: 1 bulges: 1 |
pre-miRNA
TTCGACTTGGCGTTATGACATTGCTGAGTTTGTCGGTGATGTTGCTGATGCTGGTGG
dot-bracket secondary structure
.(((...((((((((((((((((((((.....)))))))))))).)))))))).)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTCGACTTGGCGTTATGACATTGCTGAGTTTGTCGGTGATGTTGCTGATGCTGGTGG
dot-bracket secondary structure
.(((...((((((((((((((((((((.....)))))))))))).)))))))).)))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
