ABOUT THIS RECORDspecies: Oncorhynchus nerka
miRNA family: mir-1322
source: miRNEST
Taxonomy by NCBI:
Oncorhynchus nerka Oncorhynchus Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTGCTGCTGCTGATGGTCTC miRNA* GAGCTTTTCTTCAGTGGCAGTGT mismatches: 3 bulges: 2 |
pre-miRNA
ACCACAATGTCGCTGCTGCTGCTGATGGTCTCATCAATGAACTTGAGGAGTACATTACCGAGAGCTTTTCTTCAGTGGCAGTGTTGGAGGGT
dot-bracket secondary structure
(((.(((...(((((((((((..((.((((((...((((.((((...)))).))))...)))).))..))..))))))))))))))...)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACCACAATGTCGCTGCTGCTGCTGATGGTCTCATCAATGAACTTGAGGAGTACATTACCGAGAGCTTTTCTTCAGTGGCAGTGTTGGAGGGT
dot-bracket secondary structure
(((.(((...(((((((((((..((.((((((...((((.((((...)))).))))...)))).))..))..))))))))))))))...)))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|A3KPW9|BAG6_DANRE: 0.0004 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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