ABOUT THIS RECORDspecies: Torpedo californica
miRNA family: miR-4306
source: miRNEST
Taxonomy by NCBI:
Torpedo californica Torpedo Torpedinidae Torpedinoidei Torpediniformes Batoidea Pristiorajea Hypnosqualea Squalea Neoselachii Elasmobranchii Chondrichthyes Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAGAAAAGCAGTGTTAA miRNA* GACCTGCTGAGTTTCTCCAGA mismatches: 2 bulges: 2 |
pre-miRNA
AGTACGCTGCTTGACCTGCTGAGTTTCTCCAGAATAGTGTTTTTTCTTCAATCACTGAGTTTGCAGACTTTAGTGTTTTACTTCACAAAAACAAAAAATG
CTGGCAATGTCAGCAAGTGAGGTAACATGGTGGAGAGAAAAGCAGTGTTAAGCCTCTGGC
dot-bracket secondary structure
.....(((((((((((((((...((((((((.....(((((....(((((....((((..((((((..(((..((((((........))))))..)))..
)).))))..))))....))))).)))))..))))))))..))))).)))))))....)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGTACGCTGCTTGACCTGCTGAGTTTCTCCAGAATAGTGTTTTTTCTTCAATCACTGAGTTTGCAGACTTTAGTGTTTTACTTCACAAAAACAAAAAATG
CTGGCAATGTCAGCAAGTGAGGTAACATGGTGGAGAGAAAAGCAGTGTTAAGCCTCTGGC
dot-bracket secondary structure
.....(((((((((((((((...((((((((.....(((((....(((((....((((..((((((..(((..((((((........))))))..)))..
)).))))..))))....))))).)))))..))))))))..))))).)))))))....)))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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