miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Squalus acanthias, Leucoraja erinacea, Torpedo californica



ABOUT THIS RECORD

ID: MNEST009886
species: Torpedo californica
miRNA family: miR-4306
source: miRNEST

Taxonomy by NCBI:
Torpedo californica Torpedo Torpedinidae Torpedinoidei Torpediniformes Batoidea Pristiorajea Hypnosqualea Squalea Neoselachii Elasmobranchii Chondrichthyes Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGAGAGAAAAGCAGTGTTAA

miRNA*
GACCTGCTGAGTTTCTCCAGA

mismatches: 2
bulges: 2

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pre-miRNA
AGTACGCTGCTTGACCTGCTGAGTTTCTCCAGAATAGTGTTTTTTCTTCAATCACTGAGTTTGCAGACTTTAGTGTTTTACTTCACAAAAACAAAAAATG
CTGGCAATGTCAGCAAGTGAGGTAACATGGTGGAGAGAAAAGCAGTGTTAAGCCTCTGGC


dot-bracket secondary structure
.....(((((((((((((((...((((((((.....(((((....(((((....((((..((((((..(((..((((((........))))))..)))..
)).))))..))))....))))).)))))..))))))))..))))).)))))))....)))



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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