ABOUT THIS RECORDspecies: Torpedo californica
miRNA family: mir-142
source: miRNEST
Taxonomy by NCBI:
Torpedo californica Torpedo Torpedinidae Torpedinoidei Torpediniformes Batoidea Pristiorajea Hypnosqualea Squalea Neoselachii Elasmobranchii Chondrichthyes Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CATAAAGTAGAAAGCACTAC miRNA* AGTGTTTCCTACTTTTTGAT mismatches: 4 bulges: 0 |
pre-miRNA
AGACAGTGCAGTCATCCATAAAGTAGAAAGCACTACTAAACCATTCAACCCAGTGTAGTGTTTCCTACTTTTTGATGGGGGCACTGGG
dot-bracket secondary structure
...((((((..(((((...(((((((.(((((((((..................))))))))).)))))))..)))))..))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGACAGTGCAGTCATCCATAAAGTAGAAAGCACTACTAAACCATTCAACCCAGTGTAGTGTTTCCTACTTTTTGATGGGGGCACTGGG
dot-bracket secondary structure
...((((((..(((((...(((((((.(((((((((..................))))))))).)))))))..)))))..))))))..
SIMILARITIES| miRBase dre-mir-142a: 1e-21 PMRD no hits microPC no hits | UniProt no hits RFAM mir-142: 4e-19 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
