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Species belonging to selected taxon:

Squalus acanthias, Leucoraja erinacea, Torpedo californica



ABOUT THIS RECORD

ID: MNEST009888
species: Torpedo californica
miRNA family: mir-142
source: miRNEST

Taxonomy by NCBI:
Torpedo californica Torpedo Torpedinidae Torpedinoidei Torpediniformes Batoidea Pristiorajea Hypnosqualea Squalea Neoselachii Elasmobranchii Chondrichthyes Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CATAAAGTAGAAAGCACTAC

miRNA*
AGTGTTTCCTACTTTTTGAT

mismatches: 4
bulges: 0

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pre-miRNA
AGACAGTGCAGTCATCCATAAAGTAGAAAGCACTACTAAACCATTCAACCCAGTGTAGTGTTTCCTACTTTTTGATGGGGGCACTGGG

dot-bracket secondary structure
...((((((..(((((...(((((((.(((((((((..................))))))))).)))))))..)))))..))))))..


SIMILARITIES
miRBase dre-mir-142a: 1e-21

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-142: 4e-19
most similar mature miRNAs

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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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