miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Salmo salar, Oncorhynchus mykiss, Osmerus mordax, Oncorhynchus tshawytscha, Oncorhynchus nerka, Thymallus thymallus, Coregonus clupeaformis, Salvelinus fontinalis



ABOUT THIS RECORD

ID: MNEST009899
species: Salvelinus fontinalis
miRNA family: mir-1322
source: miRNEST

Taxonomy by NCBI:
Salvelinus fontinalis Salvelinus Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GCTGCTGCTGCTGTTGCTGCA

miRNA*
 CATCATCAGCATCACAGTCT

mismatches: 5
bulges: 1
View larger
pre-miRNA
 GGGTGAACTTCGAGGCCCTGATCATCGCCATGGCAGTGTTAGGCGGGACTATCATCATCAGCATCACAGTCTGTTGCTGCTGCTGCTGTTGCTGCAAGAA
ACGTCAATCAAGGCCAGACAGAGATGAGGAGAGGTTTGCCAGGAG

dot-bracket secondary structure
.((((((((((.....(((.(((.((....((((..((...((((...((..((.((.(((((.((((((.....)))).)).))))).)).))..))..
.))))...))..))))....))))).))).)))))))))).....


SIMILARITIES
miRBase dme-mir-4968: 0.00003

PMRD no hits

microPC no hits		UniProt sp|Q6P767|PTTG_RAT: 0.00008

RFAM mir-598: 0.000008		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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