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Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Linum usitatissimum, Manihot esculenta, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Bruguiera gymnorhiza, Populus trichocarpa, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST009974
species: Populus trichocarpa x Populus deltoides
miRNA family: MIR397
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATTGAGTGCAGCGTTGATGA

miRNA*
 ACCAGCGCTGCATTCAATCA

mismatches: 1
bulges: 0
View larger
pre-miRNA
 GCTTTCCTGGATTGGAGAAACATCATTGAGTGCAGCGTTGATGAAATCCTACATTTTGTGTTATTAAATTGTTACCAACCCTTTATGGGGCATGGCATCA
TTTCACCAGCGCTGCATTCAATCATGTTTTTCTAACTCTTCCGGG

dot-bracket secondary structure
.....((((((((((((((((((.((((((((((((((((.((((((...(((.((((......)))).)))..(((.((((....))))..)))....)
))))).)))))))))))))))).))))))))))))....))))))


SIMILARITIES
miRBase ptc-MIR397a: 3e-54

PMRD ptc-miR397a: 3e-54

microPC miR397: 4e-35		UniProt no hits

RFAM MIR397: 2e-62		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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