miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Linum usitatissimum, Manihot esculenta, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Bruguiera gymnorhiza, Populus trichocarpa, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST009974
species: Populus trichocarpa x Populus deltoides
miRNA family: MIR397
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATTGAGTGCAGCGTTGATGA

miRNA*
ACCAGCGCTGCATTCAATCA

mismatches: 1
bulges: 0

View larger
pre-miRNA
GCTTTCCTGGATTGGAGAAACATCATTGAGTGCAGCGTTGATGAAATCCTACATTTTGTGTTATTAAATTGTTACCAACCCTTTATGGGGCATGGCATCA
TTTCACCAGCGCTGCATTCAATCATGTTTTTCTAACTCTTCCGGG


dot-bracket secondary structure
.....((((((((((((((((((.((((((((((((((((.((((((...(((.((((......)))).)))..(((.((((....))))..)))....)
))))).)))))))))))))))).))))))))))))....))))))



SIMILARITIES
miRBase ptc-MIR397a: 3e-54

PMRD ptc-miR397a: 3e-54

microPC miR397: 4e-35
UniProt no hits

RFAM MIR397: 2e-62
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;