ABOUT THIS RECORDspecies: Persea americana
miRNA family: MIRf345
source: miRNEST
Taxonomy by NCBI:
Persea americana Persea Lauraceae Laurales magnoliids Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CACCAAAGGCCTCTGCCCTTC miRNA* AGGGCAGAGCTTTTGGTTTT mismatches: 1 bulges: 1 |
pre-miRNA
ACTGGAAGGGACACCAAAGGCCTCTGCCCTTCCATCCCTTGGATAGATAGAGAGGGAGGGCAGAGCTTTTGGTTTTATCATGTT
dot-bracket secondary structure
.((....))...(((((((((.(((((((((((.((..((.....))..))..))))))))))))))))))))...........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
ACTGGAAGGGACACCAAAGGCCTCTGCCCTTCCATCCCTTGGATAGATAGAGAGGGAGGGCAGAGCTTTTGGTTTTATCATGTT
dot-bracket secondary structure
.((....))...(((((((((.(((((((((((.((..((.....))..))..))))))))))))))))))))...........
SIMILARITIES| miRBase no hits PMRD ptc-miRf12309-akr: 5e-27 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
