ABOUT THIS RECORDspecies: Actinidia chinensis
miRNA family: MIR2673
source: miRNEST
Taxonomy by NCBI:
Actinidia chinensis Actinidia Actinidiaceae Ericales asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTCTTCCTCGTCCTCTTCCT miRNA* GTGGGGGACCAGGGGGAGGCG mismatches: 3 bulges: 0 |
pre-miRNA
GTTCCGACGCTGGTGGGGGACCAGGGGGAGGCGTTGACGGGCTTCGTGGAAGAGCTGCTGAGCCCATTGGGCCTGCTCCTGCTGCCCATTGGGCTGCTCC
TTGTGATCCAGTTCCTCTCCTCGGCCCAGGGCTCCGTGGTGGCCGGAATATTCTCGACCGACGAGCCCGACTCCATCCACCGGGTCAGCGGGTCTCCCGT
GGGCGTCGCCCTCTTTCTCTTCCTCGTCCTCTTCCTCCTCTACAA
dot-bracket secondary structure
((....))...((.(((((((.(((((((((....((.((((..((.(((.(((..((((((((((.(((((..((....)).))))).)))))).....
........))))..)))))).))((((.((((((..((((....(((....)))..))))..))))))(((((........))))).(((((...)))))
))))...))))))..))))))))).))))))).))..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
GTTCCGACGCTGGTGGGGGACCAGGGGGAGGCGTTGACGGGCTTCGTGGAAGAGCTGCTGAGCCCATTGGGCCTGCTCCTGCTGCCCATTGGGCTGCTCC
TTGTGATCCAGTTCCTCTCCTCGGCCCAGGGCTCCGTGGTGGCCGGAATATTCTCGACCGACGAGCCCGACTCCATCCACCGGGTCAGCGGGTCTCCCGT
GGGCGTCGCCCTCTTTCTCTTCCTCGTCCTCTTCCTCCTCTACAA
dot-bracket secondary structure
((....))...((.(((((((.(((((((((....((.((((..((.(((.(((..((((((((((.(((((..((....)).))))).)))))).....
........))))..)))))).))((((.((((((..((((....(((....)))..))))..))))))(((((........))))).(((((...)))))
))))...))))))..))))))))).))))))).))..........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM 7SK: 0.001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
