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ABOUT THIS RECORD
ID:
MNEST000030
species:
Allium cepa
miRNA family:
MIR2673
source:
miRNEST
Taxonomy by NCBI:
Allium cepa
Allium
Allieae
Allioideae
Amaryllidaceae
Asparagales
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CCTCTTCCTCTTCCACTTCGA
miRNA*
GGACACGGGGAGTGAAGAGGGA
mismatches:
3
bulges:
1
View larger
pre-miRNA
GTCGGGCATGTC
GGACACGGGGAGTGAAGAGGGA
TCCTTAGCAACTGAAACAAACCAACATGGATCATCTCAAGATCCGGACACTGTTGCTGCTGCTGCT
TCTTCTTCCTCTGCTGCTGCTGCTGCTGCAAAGAAGAGATCAACTAGGATTGTAACCAAGACAAAGCAGTACAGCAAAGCACAA
CCTCTTCCTCTTCCAC
TTCGA
AATAAGAAC
dot-bracket secondary structure
.((.......((
(((...((((((.(((((((..
..(((((((((...............((((((.......))))))......))))))(((((((((
(((((((....(((.((.......)).)))))))))).(((......)))(((.......))).))))))..))).))).....
)))))))))))))...
)))))
.....))..
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
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