ABOUT THIS RECORDspecies: Arachis ipaensis
miRNA family: miR162
source: miRNEST
Taxonomy by NCBI:
Arachis ipaensis Arachis Dalbergieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGGCAGCGGTTCATCGAT miRNA* CGATAAACCTCTGCATCCAGC mismatches: 4 bulges: 0 |
pre-miRNA
TGAATTTGTAAGGTGAAGTCACTGGAGGCAGCGGTTCATCGATCTCTTCCTGAAATTTGGCTGTGGAATCCTACACAAAGCAAGAATCGGGCGATAAACCT
CTGCATCCAGCGCTCCACTTTGCCTCTTT
dot-bracket secondary structure
)......((((((((.(((..(((((.((((.((((.((((.((..(((.((...((((...((((....)))).)))).)).)))..)).)))).)))).
)))).))))).))).))))))))......
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGAATTTGTAAGGTGAAGTCACTGGAGGCAGCGGTTCATCGATCTCTTCCTGAAATTTGGCTGTGGAATCCTACACAAAGCAAGAATCGGGCGATAAACCT
CTGCATCCAGCGCTCCACTTTGCCTCTTT
dot-bracket secondary structure
)......((((((((.(((..(((((.((((.((((.((((.((..(((.((...((((...((((....)))).)))).)).)))..)).)))).)))).
)))).))))).))).))))))))......
SIMILARITIES| miRBase vvi-MIR162: 4.0E-16 PMRD vvi-miR162: 4.0E-16 microPC miR162: 2.0E-27 | UniProt no hits RFAM 2MIR162_2: 3.0E-11 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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