ABOUT THIS RECORDspecies: Arachis ipaensis
miRNA family: MIR408
source: miRNEST
Taxonomy by NCBI:
Arachis ipaensis Arachis Dalbergieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGCACTGCCTCTTCCCTGGT miRNA* TGGGATCAGGCAGAGCATGA mismatches: 3 bulges: 1 |
pre-miRNA
GTATTGATACTGGGATCAGGCAGAGCATGACTGGAGCTACCTATATACACATTTGTTCATTGAGTCACAGAAGGAAACACACACATATACATACACACTT
AGATAAAGACATGATACATCATCTCATCTATTGTGTCTATTCTCATGCACTGCCTCTTCCCTGGTTCTCTCT
dot-bracket secondary structure
.....((.(((((((..((((((.(((((.(((..(((........(((....)))......)))..)))..((((...............((.((((.(
((((...((.((((....)))).)))))))..)))).))))))))))).))))))..)))).)))..))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GTATTGATACTGGGATCAGGCAGAGCATGACTGGAGCTACCTATATACACATTTGTTCATTGAGTCACAGAAGGAAACACACACATATACATACACACTT
AGATAAAGACATGATACATCATCTCATCTATTGTGTCTATTCTCATGCACTGCCTCTTCCCTGGTTCTCTCT
dot-bracket secondary structure
.....((.(((((((..((((((.(((((.(((..(((........(((....)))......)))..)))..((((...............((.((((.(
((((...((.((((....)))).)))))))..)))).))))))))))).))))))..)))).)))..))...
SIMILARITIES| miRBase ahy-MIR408: 0.00000004 PMRD ppt-miR408b: 0.000009 microPC miR408: 0.000009 | UniProt no hits RFAM MIR408: 0.0002 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
