miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST000154
species: Arachis ipaensis
miRNA family: MIR408
source: miRNEST

Taxonomy by NCBI:
Arachis ipaensis Arachis Dalbergieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATGCACTGCCTCTTCCCTGGT

miRNA*
 TGGGATCAGGCAGAGCATGA

mismatches: 3
bulges: 1
View larger
pre-miRNA
 GTATTGATACTGGGATCAGGCAGAGCATGACTGGAGCTACCTATATACACATTTGTTCATTGAGTCACAGAAGGAAACACACACATATACATACACACTT
AGATAAAGACATGATACATCATCTCATCTATTGTGTCTATTCTCATGCACTGCCTCTTCCCTGGTTCTCTCT

dot-bracket secondary structure
.....((.(((((((..((((((.(((((.(((..(((........(((....)))......)))..)))..((((...............((.((((.(
((((...((.((((....)))).)))))))..)))).))))))))))).))))))..)))).)))..))...


SIMILARITIES
miRBase ahy-MIR408: 0.00000004

PMRD ppt-miR408b: 0.000009

microPC miR408: 0.000009		UniProt no hits

RFAM MIR408: 0.0002		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




Liczniki na strone;