ABOUT THIS RECORDspecies: Arachis ipaensis
miRNA family: MIR408
source: miRNEST
Taxonomy by NCBI:
Arachis ipaensis Arachis Dalbergieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGGGATCAGGCAGAGCATGA miRNA* ATGCACTGCCTCTTCCCTGGTT mismatches: 4 bulges: 1 |
pre-miRNA
TATGTATTGATACTGGGATCAGGCAGAGCATGACTGGAGCTACCTATATACACATTTGTTCATTGAGTCACAGAAGGAAACACACACATATACATACACAC
TTAGATAAAGACATGATACATCATCTCATCTATTGTGTCTATTCTCATGCACTGCCTCTTCCCTGGTTCTCTCTT
dot-bracket secondary structure
).......((.(((((((..((((((.(((((.(((..(((........(((....)))......)))..)))..((((...............((.((((
.(((((...((.((((....)))).)))))))..)))).))))))))))).))))))..)))).)))..))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TATGTATTGATACTGGGATCAGGCAGAGCATGACTGGAGCTACCTATATACACATTTGTTCATTGAGTCACAGAAGGAAACACACACATATACATACACAC
TTAGATAAAGACATGATACATCATCTCATCTATTGTGTCTATTCTCATGCACTGCCTCTTCCCTGGTTCTCTCTT
dot-bracket secondary structure
).......((.(((((((..((((((.(((((.(((..(((........(((....)))......)))..)))..((((...............((.((((
.(((((...((.((((....)))).)))))))..)))).))))))))))).))))))..)))).)))..))....
SIMILARITIES| miRBase ahy-MIR408: 9.0E-9 PMRD ppt-miR408b: 9.0E-6 microPC miR408: 9.0E-6 | UniProt no hits RFAM 8MIR408: 4.0E-5 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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