ABOUT THIS RECORDspecies: Arachis ipaensis
miRNA family: MIR3508
source: miRNEST
Taxonomy by NCBI:
Arachis ipaensis Arachis Dalbergieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGAGGGTCCCCATGTTCTCA miRNA* AGGACACGGCGAATCCTCTATT mismatches: 2 bulges: 1 |
pre-miRNA
TTTCTTGGTCAGGCAAAATTCTCCTATCTTTGAGGACACGGCGAATCCTCTATTCTCTCTTCTGCACTGCCGCCTCGTAAATCACTACTGTGATGTTAGT
GTTTTTTATTGGGCCTAGGCCCAGTGGTGTGTAGCAAAGCACAATAGAGGGTCCCCATGTTCTCATAGTTGGACTGAGTTTTACAATAATATCA
dot-bracket secondary structure
..............((((((((((...((.((((((((.((.((.(((((((((....(((((((((.(((((...(((((.(((((.(.....).))))
)...)))))(((((....))))))))))))))))..)))...))))))))))).)).)))))))).))..)))..)))))))............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTCTTGGTCAGGCAAAATTCTCCTATCTTTGAGGACACGGCGAATCCTCTATTCTCTCTTCTGCACTGCCGCCTCGTAAATCACTACTGTGATGTTAGT
GTTTTTTATTGGGCCTAGGCCCAGTGGTGTGTAGCAAAGCACAATAGAGGGTCCCCATGTTCTCATAGTTGGACTGAGTTTTACAATAATATCA
dot-bracket secondary structure
..............((((((((((...((.((((((((.((.((.(((((((((....(((((((((.(((((...(((((.(((((.(.....).))))
)...)))))(((((....))))))))))))))))..)))...))))))))))).)).)))))))).))..)))..)))))))............
SIMILARITIES| miRBase ahy-MIR3508: 4e-39 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
