ABOUT THIS RECORDspecies: Avena barbata
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Avena barbata Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATACTCCCTCTGTCCCAAATA miRNA* TTTTTGGAACGAAGGGAGTAGAA mismatches: 3 bulges: 2 |
pre-miRNA
ATCGAAAGAATCATACTCCCTCTGTCCCAAATAAGTGACTTTGATTTGTCTAGATTCACAGACACATTTTAGTGTGTAGATACATGTGAATCTACACAAAT
CCAAGTCACTTATTTTTGGAACGAAGGGAGTAGAAGTGTGACA
dot-bracket secondary structure
)((....))....((((((((.(((.(((((((((((((((.(((((((.((((((((((.((((((....)))))).......)))))))))).))))))
).))))))))))..))))).))).))))))))...........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATCGAAAGAATCATACTCCCTCTGTCCCAAATAAGTGACTTTGATTTGTCTAGATTCACAGACACATTTTAGTGTGTAGATACATGTGAATCTACACAAAT
CCAAGTCACTTATTTTTGGAACGAAGGGAGTAGAAGTGTGACA
dot-bracket secondary structure
)((....))....((((((((.(((.(((((((((((((((.(((((((.((((((((((.((((((....)))))).......)))))))))).))))))
).))))))))))..))))).))).))))))))...........
SIMILARITIES| miRBase far-MIR1122: 3.0E-5 PMRD bdi-miR2503: 0.0001 microPC no hits | UniProt no hits RFAM 2MIR1122: 3.0E-8 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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