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Species belonging to selected taxon:

Avena barbata, Avena sativa



ABOUT THIS RECORD

ID: MNEST000170
species: Avena barbata
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Avena barbata Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATACTCCCTCTGTCCCAAATA

miRNA*
TTTTTGGAACGAAGGGAGTAGAA

mismatches: 3
bulges: 2

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pre-miRNA
TCGAAAGAATCATACTCCCTCTGTCCCAAATAAGTGACTTTGATTTGTCTAGATTCACAGACACATTTTAGTGTGTAGATACATGTGAATCTACACAAAT
CCAAGTCACTTATTTTTGGAACGAAGGGAGTAGAAGTGTGACA


dot-bracket secondary structure
((....))....((((((((.(((.(((((((((((((((.(((((((.((((((((((.((((((....)))))).......)))))))))).))))))
).))))))))))..))))).))).))))))))...........



SIMILARITIES
miRBase far-MIR1122: 0.00003

PMRD bdi-miR2503: 0.0001

microPC no hits
UniProt no hits

RFAM MIR1122: 0.00000003
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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