ABOUT THIS RECORDspecies: Avena barbata
miRNA family: MIR1120
source: miRNEST
Taxonomy by NCBI:
Avena barbata Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTCCCTCCGTTCCATAATAG miRNA* ATTTTGGAAAGGGGGAAGTAC mismatches: 3 bulges: 0 |
pre-miRNA
AAACATATTGTACTCCCTCCGTTCCATAATAGATGTCTTAGGTTTTTCAAATTTTAGATAAATCTATATGCTAAATAGTGTCTAGATTCATTCAAATTTT
AACAAACTTGAGACATCTATTTTGGAAAGGGGGAAGTACTGTACTTT
dot-bracket secondary structure
.....(((.(((((.(((((.(((((.((((((((((((((((((...(((.(((.(((.((((((.(((((....))))).)))))).))).))).)))
...)))))))))))))))))).))))).))))).))))).)))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
AAACATATTGTACTCCCTCCGTTCCATAATAGATGTCTTAGGTTTTTCAAATTTTAGATAAATCTATATGCTAAATAGTGTCTAGATTCATTCAAATTTT
AACAAACTTGAGACATCTATTTTGGAAAGGGGGAAGTACTGTACTTT
dot-bracket secondary structure
.....(((.(((((.(((((.(((((.((((((((((((((((((...(((.(((.(((.((((((.(((((....))))).)))))).))).))).)))
...)))))))))))))))))).))))).))))).))))).)))....
SIMILARITIES| miRBase tae-MIR1137: 0.0001 PMRD bsy-miR1122: 0.000000008 microPC miR1439: 0.0001 | UniProt no hits RFAM MIR1122: 0.0000000006 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
