ABOUT THIS RECORDspecies: Avena sativa
miRNA family: MIRf160
source: miRNEST
Taxonomy by NCBI:
Avena sativa Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGCAGCAGCAGAAGCAGCAG miRNA* GTCGTTTCTACTTGTACAG mismatches: 2 bulges: 2 |
pre-miRNA
ATAAGTCTGTCTGTCGTTTCTACTTGTACAGTAAGGTTACTTGTCCTGTGGTGCAGCAGCAGAAGCAGCAGTAGCGAAGT
dot-bracket secondary structure
....(.(((.((((.((((((.(((((((....(((........)))...)))))..)).)))))).)))))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ATAAGTCTGTCTGTCGTTTCTACTTGTACAGTAAGGTTACTTGTCCTGTGGTGCAGCAGCAGAAGCAGCAGTAGCGAAGT
dot-bracket secondary structure
....(.(((.((((.((((((.(((((((....(((........)))...)))))..)).)))))).)))))))).....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
