ABOUT THIS RECORDspecies: Avena sativa
miRNA family: MIRf1133
source: miRNEST
Taxonomy by NCBI:
Avena sativa Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAAGATCATCCCTCATGCTGT miRNA* AGCATGATTATGATATTGGA mismatches: 5 bulges: 1 |
pre-miRNA
AGGGTCAAATGGAGCATGATTATGATATTGGATCTACCATAAGGGACAAGATCATCCCTCATGCTGTTTCCTGGTT
dot-bracket secondary structure
.(((..((((..(((((((..(((((.(((..(((......)))..))).)))))...))))))))))))))....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AGGGTCAAATGGAGCATGATTATGATATTGGATCTACCATAAGGGACAAGATCATCCCTCATGCTGTTTCCTGGTT
dot-bracket secondary structure
.(((..((((..(((((((..(((((.(((..(((......)))..))).)))))...))))))))))))))....
SIMILARITIES| miRBase no hits PMRD ptc-miRf11461-akr: 0.0002 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
