ABOUT THIS RECORDspecies: Barnadesia spinosa
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Barnadesia spinosa Barnadesia Barnadesioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTAGCCAAGGATGACTTGCCA miRNA* GCAAGCATCCTTGCCTACTA mismatches: 2 bulges: 1 |
pre-miRNA
TTCTAGCAAAATGGAAGAAAGGTCTAAGACGAAGAAAGGAGTCTTTTTTGTGTAGCCAAGGATGACTTGCCACACGGCTAAGAGCCATTGAATTGGCCAAG
CTAGCGGCAAGCATCCTTGCCTACTACATGACAAGCTTTTTTCTCGCATCGTAGATCTTTACTTCTCTATCTT
dot-bracket secondary structure
)...........((((((((((((((.(((((.((((((((.(((((.(((((((.((((((((.((((((....((((....((((......))))..))
))...)))))))))))))).)))).))).)).))))))))))))))..)).))))))))).))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTCTAGCAAAATGGAAGAAAGGTCTAAGACGAAGAAAGGAGTCTTTTTTGTGTAGCCAAGGATGACTTGCCACACGGCTAAGAGCCATTGAATTGGCCAAG
CTAGCGGCAAGCATCCTTGCCTACTACATGACAAGCTTTTTTCTCGCATCGTAGATCTTTACTTCTCTATCTT
dot-bracket secondary structure
)...........((((((((((((((.(((((.((((((((.(((((.(((((((.((((((((.((((((....((((....((((......))))..))
))...)))))))))))))).)))).))).)).))))))))))))))..)).))))))))).))))).......
SIMILARITIES| miRBase osa-MIR169e: 2.0E-6 PMRD osa-miR169e: 2.0E-6 microPC no hits | UniProt no hits RFAM 2MIR169_2: 4.0E-5 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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