ABOUT THIS RECORDspecies: Beta vulgaris
miRNA family: MIR396
source: miRNEST
Taxonomy by NCBI:
Beta vulgaris Beta Amaranthaceae Caryophyllales core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTT miRNA* GTTCAAGAAAGTTGTGGGAAA mismatches: 0 bulges: 0 |
pre-miRNA
CTGTCATGCTTTTCCACAGCTTTCTTGAACTTTCCGCTCGTCGTGTTCGTACGTCTCCTCTAACTAATTACATTCATGGTGATCATGTTTATGGTGGAGG
AGATCCACGAGGCGAACCGAATCCATAAAATTCACCATGGAAAGTTCAAGAAAGTTGTGGGAAAATATGGCG
dot-bracket secondary structure
..((((((.(((((((((((((((((((((((((((.(((((....((((..((((((((((........(((.(((((...)))))...))).))))))
))))..)))))))))...((((.......))))....))))))))))))))))))))))))))).)))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTGTCATGCTTTTCCACAGCTTTCTTGAACTTTCCGCTCGTCGTGTTCGTACGTCTCCTCTAACTAATTACATTCATGGTGATCATGTTTATGGTGGAGG
AGATCCACGAGGCGAACCGAATCCATAAAATTCACCATGGAAAGTTCAAGAAAGTTGTGGGAAAATATGGCG
dot-bracket secondary structure
..((((((.(((((((((((((((((((((((((((.(((((....((((..((((((((((........(((.(((((...)))))...))).))))))
))))..)))))))))...((((.......))))....))))))))))))))))))))))))))).)))))).
SIMILARITIES| miRBase vvi-MIR396a: 0.0000000001 PMRD vvi-miR396a: 0.0000000001 microPC miR396: 4e-82 | UniProt no hits RFAM MIR396: 0.000000003 | most similar mature miRNAs |
Identical with: miR396 from microPC (MNEST044857) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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