miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST000225
species: Brassica napus
miRNA family: MIR400
source: miRNEST

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TATGAGAGTATTATAAGTCAC

miRNA*
 GACTTATAAAGATCTCATGAT

mismatches: 3
bulges: 0
View larger
pre-miRNA
 AGAAGTTGCTGAAGATTGTTTTATGAGAGTATTATAAGTCACCGCATTTGGTAATCAAGTGTTGCTTTCCCAAACGAAGTGACTTATAAAGATCTCATGA
TTAATCGATTTTTTGCAAG

dot-bracket secondary structure
.....((((.((((((((..((((((((...(((((((((((....(((((.((.(((...)))..)).)))))....)))))))))))...))))))))
.....)))))))).)))).


SIMILARITIES
miRBase ath-MIR400: 0.000000000000007

PMRD ath-miR400: 0.000000000000007

microPC miR400: 9e-39		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: miR400 from microPC (MNEST046525)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;