ABOUT THIS RECORDspecies: Brassica napus
miRNA family: miR396g
source: miRNEST
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTTCAAGAAAGCTGTGGAAAA miRNA* TCCCACAGCTTTSTTGAGCTT mismatches: 2 bulges: 0 |
pre-miRNA
AATTGTCATGTTTTCCCACAGCTTTSTTGAGCTTTTTTTTTSTAGAGTGTTAAATGTTAGAGATTTTTAGTTATTTAATTTCGCTSTAAAATAAGGGAAAT
GAAAAAGAAAGTTCAAGAAAGCTGTGGAAAAATATAACCA
dot-bracket secondary structure
)...((.(((((((.((((((((((.((((((((((((((..(.(((((.((((.(((...))).))))..))))).(((((.((.((...)).)))))))
).)))))))))))))).)))))))))).))))))).))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
Source sequences
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AATTGTCATGTTTTCCCACAGCTTTSTTGAGCTTTTTTTTTSTAGAGTGTTAAATGTTAGAGATTTTTAGTTATTTAATTTCGCTSTAAAATAAGGGAAAT
GAAAAAGAAAGTTCAAGAAAGCTGTGGAAAAATATAACCA
dot-bracket secondary structure
)...((.(((((((.((((((((((.((((((((((((((..(.(((((.((((.(((...))).))))..))))).(((((.((.((...)).)))))))
).)))))))))))))).)))))))))).))))))).))..
SIMILARITIES| miRBase bna-MIR396a: 3.0E-44 PMRD bna-miR396a: 3.0E-44 microPC miR396: 3.0E-7 | UniProt no hits RFAM 6MIR396: 3.0E-13 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
Source sequences
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