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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000226
species: Brassica napus
miRNA family: miR396g
source: miRNEST

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GTTCAAGAAAGCTGTGGAAAA

miRNA*
 TCCCACAGCTTTSTTGAGCTT

mismatches: 2
bulges: 0
View larger
pre-miRNA
 ATTGTCATGTTTTCCCACAGCTTTSTTGAGCTTTTTTTTTSTAGAGTGTTAAATGTTAGAGATTTTTAGTTATTTAATTTCGCTSTAAAATAAGGGAAAT
GAAAAAGAAAGTTCAAGAAAGCTGTGGAAAAATATAACCA

dot-bracket secondary structure
...((.(((((((.((((((((((.((((((((((((((..(.(((((.((((.(((...))).))))..))))).(((((.((.((...)).)))))))
).)))))))))))))).)))))))))).))))))).))..


SIMILARITIES
miRBase bna-MIR396a: 3e-44

PMRD bna-miR396a: 3e-44

microPC miR396: 0.0000003		UniProt no hits

RFAM MIR396: 0.0000000000003		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
Source sequences
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