ABOUT THIS RECORDspecies: Brassica napus
miRNA family: miR3623
source: miRNEST
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGTGCTTGGACGAATTTGCC miRNA* AGAGTGTTTGGGTTTCATG mismatches: 2 bulges: 2 |
pre-miRNA
TTTTGTTTGAGGAGAGTGTTTGGGTTTCATGATGATGGTGAGCCTGTTGTGAGGGCTTATGTCTGTGAGAACGGGCATGTCTCTGGTGCTTGGACGAATT
TGCCTCTCTACAC
dot-bracket secondary structure
...(((..(((((((.(((((((((.(((.((.(((.((((((((.......))))))))((((((....))))))..)))))))).)))))))))..))
).))))...))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TTTTGTTTGAGGAGAGTGTTTGGGTTTCATGATGATGGTGAGCCTGTTGTGAGGGCTTATGTCTGTGAGAACGGGCATGTCTCTGGTGCTTGGACGAATT
TGCCTCTCTACAC
dot-bracket secondary structure
...(((..(((((((.(((((((((.(((.((.(((.((((((((.......))))))))((((((....))))))..)))))))).)))))))))..))
).))))...))).
SIMILARITIES| miRBase vvi-MIR3623: 0.0003 PMRD no hits microPC no hits | UniProt sp|Q8LEA8|EID1_ARATH: 4e-16 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
