miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000228
species: Brassica napus
miRNA family: miR3623
source: miRNEST

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGTGCTTGGACGAATTTGCC

miRNA*
AGAGTGTTTGGGTTTCATG

mismatches: 2
bulges: 2

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pre-miRNA
TTTTGTTTGAGGAGAGTGTTTGGGTTTCATGATGATGGTGAGCCTGTTGTGAGGGCTTATGTCTGTGAGAACGGGCATGTCTCTGGTGCTTGGACGAATT
TGCC
TCTCTACAC


dot-bracket secondary structure
...(((..(((((((.(((((((((.(((.((.(((.((((((((.......))))))))((((((....))))))..)))))))).)))))))))..))
).))
))...))).



SIMILARITIES
miRBase vvi-MIR3623: 0.0003

PMRD no hits

microPC no hits
UniProt sp|Q8LEA8|EID1_ARATH: 4e-16

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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