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ABOUT THIS RECORD
ID:
MNEST000250
species:
Brassica napus
miRNA family:
miR824
source:
miRNEST
Taxonomy by NCBI:
Brassica napus
Brassica
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CCTTCTCATCGATGGTCTAGA
miRNA*
TGATCCTTGAGGAGTTAGGTC
mismatches:
3
bulges:
2
View larger
pre-miRNA
CTCGTTTTTTTTTTTGTCAAACCACTTCTCGTTTAAAATGTGTTACTTCTTCCATCAAAATC
TGATCCTTGAGGAGTTAGGTC
CATAAGTAAGTACACAG
AGTGAACACATAACTTGATAAAATCATTTACACTTTGGACAATTTCCCATGAGATGCCAAACTTTTCAATGGAGTTTGAGTTTTTCAATGATAGCTAAAA
TTTGTATCTAGCACTACTTATAGCTACACTAGTATACTTGATAATATTTTGAGAGGAGTGGGGGAGATGCTGTGTTATTATTC
CCTTCTCATCGATGGTC
TAGA
TGTGTGAGGTGACTCTCATGGAAGTAAAGGGAAATGGTGATTTATAGGAAAGCATCCAC
dot-bracket secondary structure
...((((((((....(((..((((.(((((.((((..(((.((((((((......((..(((
(((((.((((.(((..(((..
....(((((..((((.(
((((...........((((...))))....))))).((...(((((((.(((((.((((((((((.....)))))))).)).)))))....((((((.((
..(((.....)))....)).))))))((((......(((.............))).)))).))))))).))))))..))))).
))).))).)))).))))
.)))
).)).))))))))...))).....))))))))).)))))))....))))))))......
SIMILARITIES
miRBase
bra-MIR824
:
6e-21
PMRD
bra-miR824
:
6e-21
microPC
no hits
UniProt
no hits
RFAM
MIR824: 1e-19
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
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