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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000250
species: Brassica napus
miRNA family: miR824
source: miRNEST

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCTTCTCATCGATGGTCTAGA

miRNA*
 TGATCCTTGAGGAGTTAGGTC

mismatches: 3
bulges: 2
View larger
pre-miRNA
 CTCGTTTTTTTTTTTGTCAAACCACTTCTCGTTTAAAATGTGTTACTTCTTCCATCAAAATCTGATCCTTGAGGAGTTAGGTCCATAAGTAAGTACACAG
AGTGAACACATAACTTGATAAAATCATTTACACTTTGGACAATTTCCCATGAGATGCCAAACTTTTCAATGGAGTTTGAGTTTTTCAATGATAGCTAAAA
TTTGTATCTAGCACTACTTATAGCTACACTAGTATACTTGATAATATTTTGAGAGGAGTGGGGGAGATGCTGTGTTATTATTCCCTTCTCATCGATGGTC
TAGATGTGTGAGGTGACTCTCATGGAAGTAAAGGGAAATGGTGATTTATAGGAAAGCATCCAC

dot-bracket secondary structure
...((((((((....(((..((((.(((((.((((..(((.((((((((......((..((((((((.((((.(((..(((......(((((..((((.(
((((...........((((...))))....))))).((...(((((((.(((((.((((((((((.....)))))))).)).)))))....((((((.((
..(((.....)))....)).))))))((((......(((.............))).)))).))))))).))))))..))))).))).))).)))).))))
.)))).)).))))))))...))).....))))))))).)))))))....))))))))......


SIMILARITIES
miRBase bra-MIR824: 6e-21

PMRD bra-miR824: 6e-21

microPC no hits		UniProt no hits

RFAM MIR824: 1e-19		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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