ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR171
source: miRNEST
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGTGCCAATATCACG miRNA* AGATATTAGTGCGGTTCAATC mismatches: 2 bulges: 0 |
pre-miRNA
TGTTCACCGGTAACGCGAGATATTAGTGCGGTTCAATCAAATAGTCGTGTTCTCACTTGATAGAGATCGGTTTTGTTCGATTGAGCCGTGCCAATATCAC
GCGTCAACCCAAAAC
dot-bracket secondary structure
........(((.(((((.((((((.(((((((((((((.(((((.((...((((........)))).))...))))).))))))))))))).)))))).)
))))..)))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGTTCACCGGTAACGCGAGATATTAGTGCGGTTCAATCAAATAGTCGTGTTCTCACTTGATAGAGATCGGTTTTGTTCGATTGAGCCGTGCCAATATCAC
GCGTCAACCCAAAAC
dot-bracket secondary structure
........(((.(((((.((((((.(((((((((((((.(((((.((...((((........)))).))...))))).))))))))))))).)))))).)
))))..)))......
SIMILARITIES| miRBase bra-MIR171d: 2e-52 PMRD bra-miR171d: 2e-52 microPC miR171: 0.0000004 | UniProt no hits RFAM MIR171_1: 8e-24 | most similar mature miRNAs |
Identical with: bna-miR171b from PMRD (MNEST048364) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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