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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000263
species: Brassica napus
miRNA family: MIR171
source: miRNEST

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGAGCCGTGCCAATATCACG

miRNA*
 AGATATTAGTGCGGTTCAATC

mismatches: 2
bulges: 0
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pre-miRNA
 TGTTCACCGGTAACGCGAGATATTAGTGCGGTTCAATCAAATAGTCGTGTTCTCACTTGATAGAGATCGGTTTTGTTCGATTGAGCCGTGCCAATATCAC
GCGTCAACCCAAAAC

dot-bracket secondary structure
........(((.(((((.((((((.(((((((((((((.(((((.((...((((........)))).))...))))).))))))))))))).)))))).)
))))..)))......


SIMILARITIES
miRBase bra-MIR171d: 2e-52

PMRD bra-miR171d: 2e-52

microPC miR171: 0.0000004		UniProt no hits

RFAM MIR171_1: 8e-24		most similar mature miRNAs

Identical with: bna-miR171b from PMRD (MNEST048364)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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