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ABOUT THIS RECORD
ID:
MNEST000272
species:
Brassica napus
miRNA family:
miR172a
source:
miRNEST
Taxonomy by NCBI:
Brassica napus
Brassica
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GTGGCATCATCAAGATTCACA
miRNA*
GGAATCTTGATGATGCTGCAT
mismatches:
1
bulges:
0
View larger
pre-miRNA
TTTCTGGAGCCACGGTCGTTGTTTGCTGCT
GTGGCATCATCAAGATTCACA
TCCGTTGATGGACGGTGGTGGTTCACTCTACCCAAAGTTCTCTTGTGAA
AATG
GGAATCTTGATGATGCTGCAT
CGGTAATCAACGGCTATCCTTTTCCTC
dot-bracket secondary structure
.....(((.....((((((((.((((((.(
((((((((((((((((((.((
((((..((.((((...(((((......)))))....)))))).)).)).
..))
.))))))))))))))))))).
)))))).)))))))).)))........
SIMILARITIES
miRBase
aly-MIR172a
:
3e-51
PMRD
ath-miRf10431-akr
:
3e-42
microPC
miR172
:
0.00003
UniProt
no hits
RFAM
mir-172: 8e-37
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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