miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000272
species: Brassica napus
miRNA family: miR172a
source: miRNEST

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GTGGCATCATCAAGATTCACA

miRNA*
 GGAATCTTGATGATGCTGCAT

mismatches: 1
bulges: 0
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pre-miRNA
 TTTCTGGAGCCACGGTCGTTGTTTGCTGCTGTGGCATCATCAAGATTCACATCCGTTGATGGACGGTGGTGGTTCACTCTACCCAAAGTTCTCTTGTGAA
AATGGGAATCTTGATGATGCTGCATCGGTAATCAACGGCTATCCTTTTCCTC

dot-bracket secondary structure
.....(((.....((((((((.((((((.(((((((((((((((((((.((((((..((.((((...(((((......)))))....)))))).)).)).
..)).))))))))))))))))))).)))))).)))))))).)))........


SIMILARITIES
miRBase aly-MIR172a: 3e-51

PMRD ath-miRf10431-akr: 3e-42

microPC miR172: 0.00003		UniProt no hits

RFAM mir-172: 8e-37		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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