ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR167
source: miRNEST
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGATCATGTGGCAGTTTCACC miRNA* TGAAGCTGCCAGCATGATCTTA mismatches: 2 bulges: 1 |
pre-miRNA
AGAGGCGCACCAGCATCTGATGAAGCTGCCAGCATGATCTTAACTTCTCTCTCTATATATTATATATGTAGATTTGATCAGGGAAGATCAGATCATGTGG
CAGTTTCACCCGTTGATGGTTGCATCA
dot-bracket secondary structure
.((.(((.((((.((.....(((((((((((.((((((((...(((((((.(((((((((...))))))))).......)))))))...)))))))))))
)))))))).....)).))))))).)).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGAGGCGCACCAGCATCTGATGAAGCTGCCAGCATGATCTTAACTTCTCTCTCTATATATTATATATGTAGATTTGATCAGGGAAGATCAGATCATGTGG
CAGTTTCACCCGTTGATGGTTGCATCA
dot-bracket secondary structure
.((.(((.((((.((.....(((((((((((.((((((((...(((((((.(((((((((...))))))))).......)))))))...)))))))))))
)))))))).....)).))))))).)).
SIMILARITIES| miRBase bra-MIR167d: 0.000000000007 PMRD bra-miR167d: 0.000000000007 microPC miR167: 4e-44 | UniProt no hits RFAM MIR167_1: 0.0000000005 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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