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ABOUT THIS RECORD
ID:
MNEST000280
species:
Brassica napus
miRNA family:
MIR162
source:
miRNEST
Taxonomy by NCBI:
Brassica napus
Brassica
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGATAAACCTCTGCATCCA
miRNA*
GAGGCAGCGGTTCATCGATC
mismatches:
3
bulges:
0
View larger
pre-miRNA
ATGATGAAAGTTGAAGTCGCTG
GAGGCAGCGGTTCATCGATC
AATTCCTGTGAAAAATGATGTTGGAAACAATTTACATGGCAAGCATGAATCGA
TCGAT
AAACCTCTGCATCCA
GTGCTTCTCCTTCCTGATT
dot-bracket secondary structure
..(((....)))((((.(((((
((.((((.((((.(((((((
.((((.(((.....(((..((((....))))...))).....))).)))).))
)))))
.)))).)))).))))
)))))))............
SIMILARITIES
miRBase
ath-MIR162b
:
8e-18
PMRD
ath-miRf10254-akr
:
8e-18
microPC
miR162
:
5e-50
UniProt
no hits
RFAM
MIR162_2: 0.0000000000005
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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