ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR162
source: miRNEST
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCA miRNA* GAGGCAGCGGTTCATCGATC mismatches: 3 bulges: 0 |
pre-miRNA
ATGATGAAAGTTGAAGTCGCTGGAGGCAGCGGTTCATCGATCAATTCCTGTGAAAAATGATGTTGGAAACAATTTACATGGCAAGCATGAATCGATCGAT
AAACCTCTGCATCCAGTGCTTCTCCTTCCTGATT
dot-bracket secondary structure
..(((....)))((((.(((((((.((((.((((.(((((((.((((.(((.....(((..((((....))))...))).....))).)))).)))))))
.)))).)))).)))))))))))............
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATGATGAAAGTTGAAGTCGCTGGAGGCAGCGGTTCATCGATCAATTCCTGTGAAAAATGATGTTGGAAACAATTTACATGGCAAGCATGAATCGATCGAT
AAACCTCTGCATCCAGTGCTTCTCCTTCCTGATT
dot-bracket secondary structure
..(((....)))((((.(((((((.((((.((((.(((((((.((((.(((.....(((..((((....))))...))).....))).)))).)))))))
.)))).)))).)))))))))))............
SIMILARITIES| miRBase ath-MIR162b: 8e-18 PMRD ath-miRf10254-akr: 8e-18 microPC miR162: 5e-50 | UniProt no hits RFAM MIR162_2: 0.0000000000005 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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