ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR399
source: miRNEST
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGATTTGCCCGG miRNA* GGGCAAGATCTCTATTGGCAGA mismatches: 2 bulges: 1 |
pre-miRNA
GATATATCAAAGGTGGAAATGCATTACAGGGCAAGATCTCTATTGGCAGAAAACCATTACTTAGATCTTTGCATCTCTTTCTGCATTGATTTGTAGTGAG
TTCTCTGCCAAAGGAGATTTGCCCGGTAATTCTTCTGCACCAATATTTCAAAAAA
dot-bracket secondary structure
((.((((.....((((((....(((((.((((((.((((((.((((((((.(((((((((..(((((..((((........))))..))))))))))).)
)).)))))))).)))))))))))).)))))..))))))....)))).))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GATATATCAAAGGTGGAAATGCATTACAGGGCAAGATCTCTATTGGCAGAAAACCATTACTTAGATCTTTGCATCTCTTTCTGCATTGATTTGTAGTGAG
TTCTCTGCCAAAGGAGATTTGCCCGGTAATTCTTCTGCACCAATATTTCAAAAAA
dot-bracket secondary structure
((.((((.....((((((....(((((.((((((.((((((.((((((((.(((((((((..(((((..((((........))))..))))))))))).)
)).)))))))).)))))))))))).)))))..))))))....)))).))......
SIMILARITIES| miRBase aly-MIR399a: 2e-59 PMRD bna-miR399: 6e-53 microPC miR399: 9e-52 | UniProt no hits RFAM mir-399: 3e-39 | most similar mature miRNAs |
Identical with: miR399 from microPC (MNEST045632) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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