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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000295
species: Brassica napus
miRNA family: MIR399
source: miRNEST

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCCAAAGGAGATTTGCCCGG

miRNA*
 GGGCAAGATCTCTATTGGCAGA

mismatches: 2
bulges: 1
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pre-miRNA
 GATATATCAAAGGTGGAAATGCATTACAGGGCAAGATCTCTATTGGCAGAAAACCATTACTTAGATCTTTGCATCTCTTTCTGCATTGATTTGTAGTGAG
TTCTCTGCCAAAGGAGATTTGCCCGGTAATTCTTCTGCACCAATATTTCAAAAAA

dot-bracket secondary structure
((.((((.....((((((....(((((.((((((.((((((.((((((((.(((((((((..(((((..((((........))))..))))))))))).)
)).)))))))).)))))))))))).)))))..))))))....)))).))......


SIMILARITIES
miRBase aly-MIR399a: 2e-59

PMRD bna-miR399: 6e-53

microPC miR399: 9e-52		UniProt no hits

RFAM mir-399: 3e-39		most similar mature miRNAs

Identical with: miR399 from microPC (MNEST045632)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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