miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST000309
species: Brassica napus
miRNA family: MIR160
source: miRNEST

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCCTGGCTCCCTGTATGCCA

miRNA*
 GCGTACAGAGTAGTCAAGCATA

mismatches: 3
bulges: 1
View larger
pre-miRNA
 ATACGAAGTCATGCCTGGCTCCCTGTATGCCACAAGTAAATACCGATCTCATTATGAAATCGGACACTAGTGGCGTACAGAGTAGTCAAGCATAACCACT
GA

dot-bracket secondary structure
.......((.((((.(((((..(((((((((((.(((.....(((((.(((...))).)))))..))).)))))))))))...))))).)))).))....
..


SIMILARITIES
miRBase aly-MIR160b: 6e-18

PMRD ath-miRf10238-akr: 0.000000000000005

microPC miR160: 1e-40		UniProt no hits

RFAM mir-160: 9e-42		most similar mature miRNAs

Identical with: miR160 from microPC (MNEST045066)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;