miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000309
species: Brassica napus
miRNA family: MIR160
source: miRNEST

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCCTGGCTCCCTGTATGCCA

miRNA*
 GCGTACAGAGTAGTCAAGCATA

mismatches: 3
bulges: 1
View larger
pre-miRNA
 ATACGAAGTCATGCCTGGCTCCCTGTATGCCACAAGTAAATACCGATCTCATTATGAAATCGGACACTAGTGGCGTACAGAGTAGTCAAGCATAACCACT
GA

dot-bracket secondary structure
.......((.((((.(((((..(((((((((((.(((.....(((((.(((...))).)))))..))).)))))))))))...))))).)))).))....
..


SIMILARITIES
miRBase aly-MIR160b: 6e-18

PMRD ath-miRf10238-akr: 0.000000000000005

microPC miR160: 1e-40		UniProt no hits

RFAM mir-160: 9e-42		most similar mature miRNAs

Identical with: miR160 from microPC (MNEST045066)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;