ABOUT THIS RECORDspecies: Brassica oleracea var. alboglabra
miRNA family: MIR171
source: miRNEST
Taxonomy by NCBI:
Brassica oleracea var. alboglabra Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGTGCCAATATCACT miRNA* CGATATTGGTACGGTTGAATC mismatches: 2 bulges: 0 |
pre-miRNA
ATTCTAAGTAGCGATATTGGTACGGTTGAATCGAATCAAATCACTCTATCTTTCTCTTGGGTCAGTTGATTTGATTGAGCCGTGCCAATATCACTATTACG
A
dot-bracket secondary structure
).....(((((.(((((((((((((((.(((((((((((...((((............))))...))))))))))).))))))))))))))).)))))...
.
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATTCTAAGTAGCGATATTGGTACGGTTGAATCGAATCAAATCACTCTATCTTTCTCTTGGGTCAGTTGATTTGATTGAGCCGTGCCAATATCACTATTACG
A
dot-bracket secondary structure
).....(((((.(((((((((((((((.(((((((((((...((((............))))...))))))))))).))))))))))))))).)))))...
.
SIMILARITIES| miRBase ptc-MIR171i: 2.0E-8 PMRD ptc-miR171i: 2.0E-8 microPC miR171: 1.0E-43 | UniProt no hits RFAM 1MIR171_1: 4.0E-7 | most similar mature miRNAs |
Identical with: miR171 from microPC (MNEST045484) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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