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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000323
species: Brassica oleracea var. alboglabra
miRNA family: MIR171
source: miRNEST

Taxonomy by NCBI:
Brassica oleracea var. alboglabra Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGAGCCGTGCCAATATCACT

miRNA*
 CGATATTGGTACGGTTGAATC

mismatches: 2
bulges: 0
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pre-miRNA
 TTCTAAGTAGCGATATTGGTACGGTTGAATCGAATCAAATCACTCTATCTTTCTCTTGGGTCAGTTGATTTGATTGAGCCGTGCCAATATCACTATTACG
A

dot-bracket secondary structure
.....(((((.(((((((((((((((.(((((((((((...((((............))))...))))))))))).))))))))))))))).)))))...
.


SIMILARITIES
miRBase ptc-MIR171i: 0.00000002

PMRD ptc-miR171i: 0.00000002

microPC miR171: 1e-43		UniProt no hits

RFAM MIR171_1: 0.0000004		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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