ABOUT THIS RECORDspecies: Brassica rapa
miRNA family: MIR166
source: miRNEST
Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCC miRNA* GATGATGCTTGGCTCGAGA mismatches: 3 bulges: 0 |
pre-miRNA
TCTCTGAGCCAAAAGTTCAGGTGGATGATGCTTGGCTCGAGACCATTAAATATGATCATTGTGATGTTGATGATGATGATGATAATGATAATGATAGTCG
GACCAGGCTTCATTCCCCTCAACTTACACGTTTTGC
dot-bracket secondary structure
............(((((.(((.((((((.((((((.((((...(((((..(((.((((((((.((.......)).)))))))).))).)))))....)))
).)))))).)))))).))).)))))...........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCTCTGAGCCAAAAGTTCAGGTGGATGATGCTTGGCTCGAGACCATTAAATATGATCATTGTGATGTTGATGATGATGATGATAATGATAATGATAGTCG
GACCAGGCTTCATTCCCCTCAACTTACACGTTTTGC
dot-bracket secondary structure
............(((((.(((.((((((.((((((.((((...(((((..(((.((((((((.((.......)).)))))))).))).)))))....)))
).)))))).)))))).))).)))))...........
SIMILARITIES| miRBase bna-MIR166c: 1e-25 PMRD bna-miR166c: 1e-25 microPC miR166: 0.00003 | UniProt no hits RFAM mir-166: 6e-19 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
